rs245908360 SNP Detail

Summary

• ID
  rs245908360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101677314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTGGGC GCCAAGCAAG
  TGTGAGAAAG ACTACCTCCC TTGGGATCTG GGTTGCTTTA GATGCCGTCA CAAGGACCCA
  CAGGCCCACA GGGCTGCTTT CAAAGTTCAT CTGTCTAACC AAACAGTACT TCTGAGAAAG
  AAAAGGTGCA TGCAATCTCT TCCAGCCTGT AGGAGTCAGA GAAGGGACAA AAACCTTAAC
  Y
  CCCTGGCACC TGAACTGGGC TCTTTCTGCC ACACAAACTC CTCCCCTTTA CCTACCAAAC
  TGTTCTTTAA AGTTTGAACC TGCTGCCGCT CTCCTCTAGG GACCCCCCTT TTCATGAGAG
  CCTGGGTCAG TCCATATATA TGGTGAGGTA TCTTTCATTC TCTTCCCTGT TAGAGAAATC
  CCTATATAGT TATGGGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384487380	MGP_WTSI_11_101647802	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245908360					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487380	MGP_WTSI_11_101647802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101677314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	680 bp distal
Etv4	ets variant 4	1117 bp upstream
Gm39392	predicted gene, 39392	601 bp upstream
Gm71843	predicted gene, 71843	within coordinates
Rr386582	regulatory region 386582	within coordinates
Rr402993	regulatory region 402993	914 bp downstream
Rr457077	regulatory region 457077	1510 bp distal
Rr457078	regulatory region 457078	627 bp distal
Rr457079	regulatory region 457079	259 bp proximal
Tssr105162	transcription start site region 105162	1240 bp upstream
Tssr105163	transcription start site region 105163	1276 bp upstream
Tssr110966	transcription start site region 110966	1921 bp upstream
Tssr110967	transcription start site region 110967	1851 bp upstream
Tssr110968	transcription start site region 110968	1813 bp upstream
Tssr110969	transcription start site region 110969	1655 bp upstream
Tssr110970	transcription start site region 110970	1632 bp upstream
Tssr110971	transcription start site region 110971	1306 bp upstream
Tssr110972	transcription start site region 110972	1268 bp upstream
Tssr110973	transcription start site region 110973	1247 bp upstream
Tssr110974	transcription start site region 110974	1199 bp upstream