rs245914943 SNP Detail

Summary

• ID
  rs245914943
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85920105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCAAAG CCACTTTTCA
  GGGTCCCAAG AGGGACCTAA GGTCCTGGTA GCAGAGCAGA GTATTGAAAA CAGTTATTCC
  TAGTTTCTCA ACAACCCTAA GCGATGTATT CCTCCGCCGC CTTCTCTCCT CTGGCCTGGG
  CAGCCTGTAT TTTCACCTGC CCGCGAGAGA GCAGGCTTTG GGGCGTGCAC AGAGAAGGGT
  K
  TGCGCGAACA TGTTCGCGTG CTGTTGGAAG TGGCTTCGGC GAAGCTTCTA GATGTGAGGA
  TTTTTTTTTT CCTTTCCTCG ATTGAAGATG ACTTGCGACT AACTTCAGGT AGTGCATTCT
  TAAGGGACGA GTATTAGTCC GACTGTCGTC TATGAGTTTT TCCTGCGCGT TGGCGCTGAG
  TGAAATCACC TCTCCCCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486751	CHEV_17_86012017	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245914943					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85920105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	within coordinates
Cpgi9588	CpG island 9588	927 bp proximal
Gm55781	predicted gene, 55781	914 bp downstream
Gm55782	predicted gene, 55782	705 bp upstream
Gm55783	predicted gene, 55783	1985 bp upstream
Rr340290	regulatory region 340290	1704 bp distal
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	931 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	549 bp upstream
Tssr146085	transcription start site region 146085	755 bp upstream
Tssr149705	transcription start site region 149705	300 bp upstream
Tssr149706	transcription start site region 149706	377 bp downstream