rs245916546 SNP Detail

Summary

• ID
  rs245916546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24022708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGCATCT GTGTCACATT
  CTTGATCATA AGGCTCAGGA AGCATTGTAG AAGAGGCATC TTAAGCACCA GAGGTAGTGG
  ACATCTACTG CAAAACCTTC TTTGCCAGAC AAGACAGCGC TGTTGTACAC GTGAGCTCAC
  AGCAGCTGTG GCTGTAAACA CAAGACCTGA GCAAGATCCA GCCAGCCAAA ATCTCGCCAC
  R
  GTCAGGGCGG GAGCTCATGA AGTCTCACCC ATGGCCGAGG AGCTATTGGC AATTTATGGC
  TGCTAGCCGG TGAGAGCATC AGTTTTCTTC AGGGATTCAG ATTCTAAGAT GCTATCCATA
  TTCCATTAGA TAGTTCAACA CCTATGAACA CACAGACAAC ACTACGTGAC TCAGTAGGGA
  GGAGGAGGAG GAGGAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387991671	MGP_WTSI_13_23930594	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245916546					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387991671	MGP_WTSI_13_23930594	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24022708 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	326 bp downstream
Rr475959	regulatory region 475959	1811 bp distal
Rr475960	regulatory region 475960	713 bp proximal
Rr475961	regulatory region 475961	796 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	709 bp upstream
Tssr4011	transcription start site region 4011	900 bp upstream
Tssr4012	transcription start site region 4012	998 bp upstream
Tssr118873	transcription start site region 118873	1815 bp downstream
Tssr118874	transcription start site region 118874	1764 bp downstream
Tssr118875	transcription start site region 118875	676 bp upstream
Tssr118876	transcription start site region 118876	720 bp upstream
Tssr118877	transcription start site region 118877	852 bp upstream
Tssr118878	transcription start site region 118878	873 bp upstream