rs245922730 SNP Detail

Summary

• ID
  rs245922730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141932781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCACGG TCCTGAGAAG
  CTGAGCTGGC TTCAGCCATG GACATAGCAC TTGCTATCAC TCTGCTTCTC CTGTAAACAT
  TTCTCTCAAC TCCCCTACAC AATACCTTCA AACAGAACAC AGGGAGAGTG GTCTGTACCT
  ACAGCAGTAA ATGTTCTTCA GCAACCAGCG AGTAAGTATG CAAGCTTGCC ACCTCCGACC
  Y
  GAGGGGCCTG GGTAATGTGT CACATCTGGC CAGGCATCAC TCTGGGGCAC GATTACCCAA
  AGCTGAAGGG AAGCTTTCAT CTCAGGAGCT GCCGTCCTGG CAGGCCTCTG TAACCATCTT
  CCTCCTGGCC CATGGATCCC TCAGCCTCAC CCTGTTCTCT TGCCTAAGTC TCCACCTTGG
  CCTGGCTTTG GCTTGTCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373449944	MGP_WTSI_7_149564949	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245922730					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373449944	MGP_WTSI_7_149564949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141932781 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Tssr70134	transcription start site region 70134	1968 bp downstream
Tssr70135	transcription start site region 70135	1913 bp downstream
Tssr70136	transcription start site region 70136	1701 bp downstream
Tssr70137	transcription start site region 70137	1739 bp upstream
Tssr70138	transcription start site region 70138	1787 bp upstream
Tssr70139	transcription start site region 70139	1806 bp upstream
Tssr70140	transcription start site region 70140	1836 bp upstream
Tssr70141	transcription start site region 70141	1849 bp upstream
Tssr70142	transcription start site region 70142	1885 bp upstream
Tssr75765	transcription start site region 75765	1984 bp upstream
Tssr75766	transcription start site region 75766	1962 bp upstream
Tssr75767	transcription start site region 75767	1952 bp upstream
Tssr75768	transcription start site region 75768	1930 bp upstream
Tssr75769	transcription start site region 75769	1908 bp upstream
Tssr75770	transcription start site region 75770	1876 bp upstream
Tssr75771	transcription start site region 75771	1650 bp upstream
Tssr75772	transcription start site region 75772	1592 bp upstream
Tssr75773	transcription start site region 75773	1392 bp upstream
Tssr75774	transcription start site region 75774	1746 bp downstream
Tssr75775	transcription start site region 75775	1767 bp downstream
Tssr75776	transcription start site region 75776	1773 bp downstream
Tssr75777	transcription start site region 75777	1806 bp downstream
Tssr75778	transcription start site region 75778	1846 bp downstream
Tssr75779	transcription start site region 75779	1882 bp downstream
Tssr75780	transcription start site region 75780	1892 bp downstream
Tssr75781	transcription start site region 75781	1914 bp downstream
Tssr75782	transcription start site region 75782	1938 bp downstream