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rs245934805 SNP Detail
Summary
  • ID
    rs245934805
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr10:13841320 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTTGGTAC GCGGGCAAAA
TGTAAGGATC CCACAGATCA CAAGGAACCA GTACGTGGGA AAGGGGGCTA GAGAGGGAAG
GGAATGGGCG CGAAGGAGGT TTCCACACCC TAGTAGGAAA TTCTCAGACC GCTCCAGACT
CGCCAGTGTT TCTGCGTGGC AAGCCGATAC CCGCTCTCAG CGGAGATCTC GGCTCCGAGG
S
AAGAGAGCGC GACCGCGACC TTCCCTCCCC GCGCGCCCGC ATCAGGGCCA GTCCGGGTCG
CACATCCTTC GCCCCGCTGG CCTGCTCCAG ACTGGTTTTT CTGGTTCAGC CTCCCTCCCA
GGGACGCGCT GGGGGATCCG ATGACGTCGC TGGCTGAGTC TCTCCCTCTT CCTCCCTCCC
TCCCCTCTCC CCCGCCCGCC                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss379498360 MGP_WTSI_10_13685382 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245934805 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss379498360 MGP_WTSI_10_13685382 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:13841320 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
2900084C01Rik RIKEN cDNA 2900084C01 gene 198 bp upstream
Cpgi1318 CpG island 1318 within coordinates
Gm56954 predicted gene, 56954 within coordinates
Gm66890 predicted gene, 66890 within coordinates
Hivep2 human immunodeficiency virus type I enhancer binding protein 2 499 bp upstream
Rr384171 regulatory region 384171 119 bp downstream
Rr427854 regulatory region 427854 946 bp distal
Rr427855 regulatory region 427855 within coordinates
Rr427856 regulatory region 427856 156 bp proximal
Rr427857 regulatory region 427857 691 bp proximal
Rr427858 regulatory region 427858 814 bp proximal
Tssr3141 transcription start site region 3141 535 bp upstream
Tssr92402 transcription start site region 92402 929 bp downstream
Tssr92403 transcription start site region 92403 762 bp downstream
Tssr92404 transcription start site region 92404 729 bp downstream
Tssr92405 transcription start site region 92405 701 bp downstream
Tssr92406 transcription start site region 92406 533 bp downstream
Tssr92407 transcription start site region 92407 328 bp downstream
Tssr92408 transcription start site region 92408 297 bp downstream
Tssr92409 transcription start site region 92409 264 bp downstream
Tssr92410 transcription start site region 92410 237 bp downstream
Tssr92411 transcription start site region 92411 203 bp upstream
Tssr92412 transcription start site region 92412 275 bp upstream
Tssr92413 transcription start site region 92413 307 bp upstream
Tssr92414 transcription start site region 92414 517 bp upstream
Tssr92415 transcription start site region 92415 598 bp upstream
Tssr92416 transcription start site region 92416 630 bp upstream
Tssr92417 transcription start site region 92417 663 bp upstream
Tssr92418 transcription start site region 92418 692 bp upstream
Tssr92419 transcription start site region 92419 1401 bp upstream
Tssr92420 transcription start site region 92420 1433 bp upstream
Tssr92421 transcription start site region 92421 1558 bp upstream
Tssr96784 transcription start site region 96784 68 bp downstream
Tssr96785 transcription start site region 96785 86 bp downstream
Tssr96786 transcription start site region 96786 1174 bp downstream
Tssr96787 transcription start site region 96787 1204 bp downstream
Tssr96788 transcription start site region 96788 1245 bp downstream
Tssr96789 transcription start site region 96789 1900 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory