rs245937128 SNP Detail

Summary

• ID
  rs245937128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83007199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCTGGG TTTCTGAGGG
  ACCTCTGCTG CTCCCTTGCC TCCTCGCTCC TATCACTTTT CCCAGGCTTG TCCTTTCTGC
  TCACTCCCTT CATTTTCTCT CCTCTCAACT CTACAGCCTT GTCTTTCTTC TCATAGCTGG
  CTTTTTGGAT CTAAAATGCA CTGAGCCAGG GAAACTTATA TTACCAAAAT TATCAAAAGA
  R
  AGGGCACAAA GAAAGAGCTG GTGAGTCTTG TCCGCTTGGG TTGCCCTTGG AACCTCCCAT
  AGAAACCCAT CTTCCCAAAG AGTTAGGAGA TGCAGCTTGC ACCTTGTGAG CCAGCATCCT
  ACTCTGCCTC CCCTGGCTCA GCTTCCCTCT CCAATCATCT TCCTCCCTGG AGAGGCTTCA
  ACAGGTGCTC ATGCTGTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323766841	CHEV_11_82929875	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245937128					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83007199 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
LxMm-9c11	LINE repeat x, subfamily 9, member c11	662 bp distal
Rr237031	regulatory region 237031	799 bp distal
Rr247350	regulatory region 247350	1 bp proximal
Slfn1	schlafen 1	476 bp upstream
Tssr103652	transcription start site region 103652	307 bp upstream
Tssr103653	transcription start site region 103653	415 bp upstream
Tssr103654	transcription start site region 103654	436 bp upstream
Tssr103655	transcription start site region 103655	495 bp upstream
Tssr103656	transcription start site region 103656	540 bp upstream
Tssr103657	transcription start site region 103657	579 bp upstream
Tssr103658	transcription start site region 103658	601 bp upstream
Tssr103659	transcription start site region 103659	630 bp upstream
Tssr103660	transcription start site region 103660	1956 bp upstream
Tssr109644	transcription start site region 109644	217 bp downstream