rs245940613 SNP Detail

Summary

• ID
  rs245940613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11487673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAAATGC TCCCAAATGA
  TGGGGCTCCC CATTTACGGT TCGTTCGCTC TCTGGTTTTC TCTGGAGTAC CCACTAGCAG
  GCACTGTCCT GTGTTTCCCG GGTTGATGGC GTTTACAAAA ATCCCTCTAG AGTTTCATTC
  CTGTGGGAAC TTCATTTTCC AGGAAAGGAA GGTCTGGGAA CCTAATGAAA ACCAGTGTTT
  Y
  CCTTTATCCC GGTCTCTGCA TTTTGCCCAC GGTCTTTACA CACCTTGGTA CGTTCACAGA
  AACTGCAGTT CCTAGAGCGC CCCTGGTGGC CAACCAGCTC TAAACTGGTT GCCAGGCGGC
  TGCGGGCTCC AAATTGGGAG AGCAGCTTGG AATGCGTTTG AAGCTGCTAA GGCCGAGCAA
  GCAGAGAGAA GCTGGCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385137474	MGP_WTSI_12_11444478	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245940613					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385137474	MGP_WTSI_12_11444478	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11487673 () rs orientation: forward

Symbol	Name	Function Class
4930511A02Rik	RIKEN cDNA 4930511A02 gene	561 bp upstream
Cpgi4418	CpG island 4418	900 bp distal
Cpgi4419	CpG island 4419	348 bp proximal
Rr462903	regulatory region 462903	1542 bp distal
Rr462904	regulatory region 462904	569 bp distal
Rr462905	regulatory region 462905	41 bp proximal
Rr462906	regulatory region 462906	542 bp proximal
Rr462907	regulatory region 462907	1070 bp proximal
Tssr3791	transcription start site region 3791	1185 bp upstream
Tssr3792	transcription start site region 3792	1132 bp upstream
Tssr3793	transcription start site region 3793	952 bp upstream
Tssr112802	transcription start site region 112802	519 bp upstream
Tssr115746	transcription start site region 115746	1163 bp upstream
Tssr115747	transcription start site region 115747	1069 bp upstream
Tssr115748	transcription start site region 115748	1054 bp upstream
Vsnl1	visinin-like 1	1094 bp upstream