rs245946949 SNP Detail

Summary

• ID
  rs245946949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110808568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGAAGT TGGGCGCAAA
  GGGTTTCAAC GTGTACATAT TTTATGGAGG GTGTGTTTCA AACTGGCCCC TGGAACAACT
  GATGTGTTTT AGCAAATTAG AAGTAACATC TGGGGCTGGC GAGATGACTC AGTGGTTAAG
  AGCACCAACT GATCTTCCAA AGGTCCTGAG TTCAAACCCC AGCAACCACA TGGTGGCTCA
  Y
  AACCATCCAT AACGAAATCT GATGCCCTCT TCTGGAGTAT CTGAGGACAG CTACAGTGTA
  CTTACTGTAA TATAATAAGT AAATAAATAC ATAATAAATA AACAAATAAA TAAATAGAAA
  AATAGAAGTA ACATCTGAAA AGCCCTTCTG TTTGTCTATT TTTCTTTCTT TTTTTTTTTT
  TGTCTAACAG TTTTCATATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387344479	MGP_WTSI_12_112080344	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245946949					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387344479	MGP_WTSI_12_112080344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110808568 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	within coordinates
Cpgi5123	CpG island 5123	969 bp distal
Cpgi5124	CpG island 5124	1633 bp proximal
Gm26912	predicted gene, 26912	142 bp downstream
Mok	MOK protein kinase	1195 bp upstream
Rr403503	regulatory region 403503	999 bp downstream
Rr403504	regulatory region 403504	1548 bp upstream
Rr473007	regulatory region 473007	1218 bp distal
Rr473008	regulatory region 473008	1088 bp distal
Rr473009	regulatory region 473009	724 bp distal
Rr473010	regulatory region 473010	250 bp distal
Rr473011	regulatory region 473011	19 bp proximal
Rr473012	regulatory region 473012	1199 bp proximal
Rr473013	regulatory region 473013	1708 bp proximal
Tssr115236	transcription start site region 115236	1097 bp downstream
Tssr117796	transcription start site region 117796	1273 bp upstream
Tssr117797	transcription start site region 117797	1184 bp upstream