rs245949528 SNP Detail

Summary

• ID
  rs245949528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64997676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAACC CTGTCTTGAA
  AAAAACCAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAGA GTTGCCTTGG TCATGGTATC
  TCTTCACAGC AATGAAAATT CTGACTAGGA CAGAAGTAGA GATATGTTTG TCTAACTAAA
  ACACAAATTC ATAACATATA GCTTCCCAAA TATTTACTAT ATAAAATTCC AAATATAGTC
  Y
  GTAGTCAGGA GACTAAAAGA CACTGAAACA AGAAACACAA TAAAGTAGTT ACGATTTTTA
  CCCTTGTTTA AAAAAAGATG ATTCCAGCAT CATCTGTACT GGAACTTCAT TACTGAAAGC
  AAATTCAGAG TGTAACAACT TAGATTTAAG AAAACAAACC CAAACATTTA TTGTCTTTAA
  ATCTATGTTT GTGAAATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349895546	MGP_WTSI_1_65005091	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245949528					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349895546	MGP_WTSI_1_65005091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64997676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	1630 bp distal
Gm51627	predicted gene, 51627	within coordinates
Plekhm3	pleckstrin homology domain containing, family M, member 3	1693 bp upstream
Rr412357	regulatory region 412357	1704 bp distal
Rr412358	regulatory region 412358	1751 bp distal
Rr412359	regulatory region 412359	1203 bp distal
Tssr11945	transcription start site region 11945	1792 bp upstream
Tssr11946	transcription start site region 11946	1735 bp upstream
Tssr11947	transcription start site region 11947	1699 bp upstream
Tssr11948	transcription start site region 11948	1682 bp upstream