rs245949913 SNP Detail

Summary

• ID
  rs245949913
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGAGTT CGAGGCCAGC
  CTGGTCTACA GAGTGAGTTC CAGGACAGCC AGAGCTGCAC AGAAAAATCC TGCCTCAAAA
  ATAAATAAAT AAATCAAGAA AGGTTTGGGC TGGAGAGATG GCTCAGGAGT TAAGAGCACA
  GACTGCTCTT CTAAAGGTCC TGAGTTCAAT TCCCAGCAAC CACATGGTGG CTCACAACCA
  T
  CTGTGTACTC CTCATATACA TAAAATAAAA ATTTTTAAAG ATTTATTTTA TACATAAGTA
  CACTGTAGCT GTCTTCAGAC ACCCCAGAAG AGGGCATCTG ACCTCATTAC AGATGGTTGT
  GAGCCACCAT GTGATTGCCA GGACTTGAAC TCAGGACCTT CCAAAGAACA GTCAGTGCTC
  TTACCTGCTG AGCCATCTCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321692399	CHEV_5_130361748	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245949913					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914718 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	1090 bp proximal
Rr399383	regulatory region 399383	1331 bp upstream
Rr621372	regulatory region 621372	328 bp proximal
Rr621373	regulatory region 621373	1583 bp proximal
Tssr53498	transcription start site region 53498	1262 bp downstream
Tssr53499	transcription start site region 53499	1411 bp downstream
Tssr53500	transcription start site region 53500	1539 bp downstream
Tssr53501	transcription start site region 53501	1565 bp downstream