rs245954125 SNP Detail

Summary

• ID
  rs245954125
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120633845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTCCAG GCGGCGCCAC
  GGAGGACGTG CACGCCCTCT CTCCCAACTC CCGGGCCTCC CGGTCTCCGC TCATTGGGCA
  GGGAGGACGC CCCTCCTGCG TTTGTACGTG CACCGGGTGG AAACACGACC TGGAGTCGTT
  GGCGTTCCGG GCTGGGAAGG GCCGCGGGGG ACGTGAGAAG GCCGCGCGCC TGCCGCTCCT
  C
  CCCCGCCCCC CCTCCCGCGC CATCTCCCCC TCCCTCTGCC TCGGCCCCGA AGGGGGCTGC
  ACGGGCGACT TGGCGGCGAT GGCTCGAGCT CCGGCGGCGA CGACGGTGGC CGGAGGCGGC
  GGCTCCTCCT CCTCCTCCTC CTGGGCTTGG GCCCGGCGGT GATCCGAGCT GGCGGCCGCG
  GCCCCCCGAT GAGACTGTTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372947409	MGP_WTSI_7_128178136	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245954125					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372947409	MGP_WTSI_7_128178136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120633845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	within coordinates
Gm9905	predicted gene 9905	within coordinates
Gm72635	predicted gene, 72635	1418 bp downstream
Mettl9	methyltransferase like 9	within coordinates
Rr166622	regulatory region 166622	within coordinates
Rr168961	regulatory region 168961	1445 bp distal
Rr400600	regulatory region 400600	within coordinates
Tssr68810	transcription start site region 68810	1855 bp downstream
Tssr68811	transcription start site region 68811	1835 bp downstream
Tssr68812	transcription start site region 68812	1820 bp downstream
Tssr68813	transcription start site region 68813	201 bp downstream
Tssr68814	transcription start site region 68814	93 bp downstream
Tssr68815	transcription start site region 68815	42 bp downstream
Tssr68816	transcription start site region 68816	within coordinates
Tssr68817	transcription start site region 68817	117 bp upstream
Tssr68818	transcription start site region 68818	160 bp upstream
Tssr68819	transcription start site region 68819	938 bp upstream
Tssr68820	transcription start site region 68820	997 bp upstream
Tssr74531	transcription start site region 74531	172 bp upstream