rs245957700 SNP Detail

Summary

• ID
  rs245957700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156077803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCAGAGG CTGCTTCCGC
  CCATAAGAAA GATGGCGGCT TCGAGATTCG TACCGGAGGC CGGGTGTTTT TTTCCCCACC
  GTTCCCGGTT GTCTTATTCG CCCCTTCCCG GAAGAAAGAT GGCGGCGGCC TGAGCCGAGT
  TCTGCGTAAG ACTTGGCGGG CGCCCAGACC CGGCGCATCA GAAGCCGGGG TGAGTGAGGG
  R
  TCCCTGCAGT CGCCGTGCGA GGGGCGGGCT TGGGAGGCCA TTCGGGTAGC GTTCGAATCG
  CGCCAGGTCT GAGCCGGCTC GACCCCGCGG GCCGCCCTCT TCCTCGGCTG CTGCTTCCGG
  AACTCACTGC CGCGGGGGAT CTGAGGCTCG GGGCTCTGTT ACCGGCTGGC GTTGTGACCT
  CAACTTGTGG TCCAGCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444390	CHEV_4_155367455	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245957700					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156077803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6			697 bp upstream
Cpgi15496	CpG island 15496			within coordinates
Rr377473	regulatory region 377473			within coordinates
Rr606629	regulatory region 606629			1984 bp distal
Rr606630	regulatory region 606630			751 bp distal
Rr606631	regulatory region 606631			within coordinates
Rr606632	regulatory region 606632			648 bp distal
Rr606633	regulatory region 606633			374 bp distal
Rr606634	regulatory region 606634			72 bp distal
Rr606635	regulatory region 606635			42 bp proximal
Sdf4	stromal cell derived factor 4			Intron
				mRNA-UTR
Tssr1404	transcription start site region 1404			400 bp downstream
Tssr40748	transcription start site region 40748			933 bp downstream
Tssr40749	transcription start site region 40749			159 bp downstream
Tssr40750	transcription start site region 40750			50 bp downstream
Tssr40751	transcription start site region 40751			30 bp downstream
Tssr40752	transcription start site region 40752			102 bp upstream
Tssr44987	transcription start site region 44987			1004 bp upstream
Tssr44988	transcription start site region 44988			672 bp upstream