rs245960993 SNP Detail

Summary

• ID
  rs245960993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACACAAC CTGTGGTATT
  ATTCAAACAG ATTCAACCAC GATGCCATTT TTCTCAAAGC ATTTTGTAAA AATGGGGTTC
  TCGCCTGCAG ACGTCAGCAG CCATCCGTGA ACAGTGAGAG GAAGGTCCCT GTGGACCTGG
  ACCTCGGGCC TAGAGCCAGA GCCCCACAGG CAGACACACT GACTTCTGAA CCAGACTTCT
  Y
  GCTGGCGTCA TGACTTTGGG AATATTGCTA ATCCTCAGAG CCCCAGTGTT CTAAGGGCCT
  CCAGATCCCA CCACCCTCCA TAGCTCCTTC CCAGAACACA CAATTACCAC GAGGAAACTG
  TAACCAGGAA ATCTTATAAA GCAGTGGTAT TGGCTGAACG AGTCTCCTTC CTCTTAGCTG
  CCGGTGCTTG AAAGAAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864904	CHEV_3_107044546	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245960993					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148944 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	238 bp upstream
Prok1	prokineticin 1	1921 bp upstream
Rr582947	regulatory region 582947	within coordinates
Rr582948	regulatory region 582948	249 bp proximal
Tssr31192	transcription start site region 31192	161 bp upstream
Tssr31193	transcription start site region 31193	232 bp upstream
Tssr31194	transcription start site region 31194	287 bp upstream