rs245972886 SNP Detail

Summary

• ID
  rs245972886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34885672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGGCAT GCAGCACCGC
  CTACCCCAGC ACGTCTTGCT CACACTCCTT GAGCGCAGGG ACAGCCTGGT CTTTGAGCTC
  TTCTCCCCCA CCTCACCCAA GTCTGGGTGT AGCCCCTTCG TTCACTCAAC TAGGAAGTCC
  TTTCTAAGTC TGATCCCAGT CCCCTCCTGT CTCCCCTGAC TAGGGTTGGG GGTGGGGGGG
  R
  AGGGGGAGTT CCCTTTAAGG GCGGTGGGGG AGGGGGCTGC CGGCCGTCCC TCCTTCCGTC
  CCTCCCTGGA TCCAGCCGCC CGGGGGCCCC CGGGGGCCCG GGCCCCGTGC CAGCGCATGC
  GCCCGCCTGT GGGCGCTGTC CCGGGCTGCG AGGGCCGCGA GCGCACCGAC AGACGAACCG
  ACCGACGGAG GACTGGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370970147	MGP_WTSI_7_35971266	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245972886					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370970147	MGP_WTSI_7_35971266	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34885672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	within coordinates
Gm38988	predicted gene, 38988	1288 bp upstream
Rr645330	regulatory region 645330	525 bp distal
Rr645331	regulatory region 645331	within coordinates
Rr645332	regulatory region 645332	258 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	138 bp upstream
Tssr65893	transcription start site region 65893	111 bp upstream
Tssr65894	transcription start site region 65894	123 bp upstream
Tssr65895	transcription start site region 65895	162 bp upstream