rs245993292 SNP Detail

Summary

• ID
  rs245993292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24631185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTGCTAAT CCCTTGGGCT GGGGGAGAGA CACTAATCCT
  TCGGGCCCGT CGGGGCTGGT CCGGGGAATG TGCCCCCACT AGGATTATCG GTACCGATGC
  Y
  CTGGACAGAG GCTGCTTTGT ATTCTACGAC AGCAGGGAGG GGGGCATGGG TAGAGGGAGG
  AGGGCTTGGT GGTGAAACAC ACTGAGGGCA AAGCCTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495731	CHEV_5_23932005	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245993292					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24631185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15599	CpG island 15599	1812 bp distal
Cpgi15600	CpG island 15600	322 bp distal
Rr124927	regulatory region 124927	within coordinates
Slc4a2	solute carrier family 4 (anion exchanger), member 2	within coordinates
Tssr45418	transcription start site region 45418	896 bp downstream
Tssr45419	transcription start site region 45419	655 bp upstream
Tssr45420	transcription start site region 45420	1320 bp upstream