rs245993838 SNP Detail

Summary

• ID
  rs245993838
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:123032366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGTGG AAATTAGGGG
  TTTCCTTTTC AGCGGAGCCC TGACACACAC CACCTGTGTG GTCCCCGCCG CAAACATCCT
  GAAGCCCGGC TCCCGGAAGA CTACAAGGAT CGGAATAATG GGGAACTTGG GTGCGGACGA
  CGCCGGGGAA GGAGTGACCA GAGAAGCGCG GCGGGCGAGC GAGGAGGAGC GGCGCGACCG
  S
  GATCTGTCAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAACCAGC GGCAGGCAGG
  CTCACGCCGA GCCACTGCAC CCGGGCTCCG CCAAGGCCCC AAGTGGGAGC GGCACTGCCG
  GAGGGAGGAG GACCCGGAGC CCCGCGAGCC CCGGCCGCCG CTTCCGCGCA GCCCCGGGCG
  CGCACCGCCC ACCGCGAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382068934	MGP_WTSI_10_122633517	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245993838					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382068934	MGP_WTSI_10_122633517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:123032366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2311	CpG island 2311	within coordinates
Gm4129	predicted gene 4129	within coordinates
Gm55025	predicted gene, 55025	415 bp downstream
Rr224370	regulatory region 224370	within coordinates
Rr402316	regulatory region 402316	1262 bp downstream
Tssr99665	transcription start site region 99665	6 bp downstream
Tssr99666	transcription start site region 99666	455 bp downstream
Tssr99667	transcription start site region 99667	511 bp downstream
Tssr99668	transcription start site region 99668	515 bp downstream
Usp15	ubiquitin specific peptidase 15	within coordinates