rs246000355 SNP Detail

Summary

• ID
  rs246000355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83689209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTATTT CCCAGCACCT
  AGCCTTGCGT GGGTTGAGGC TTAGAGATGG CTGGGTGGGC GGTAGGGTAG CCTGACCTGC
  CGCGGCTCCG CTGCTCCAGT TTTCCCACTC GCTTGGATAC CGCCGGCTCC GGCGCTCCTC
  CGCCTGGCCT GGCCGCCTGG CCTGGCCGAC GCTTTCTTCC TCGGCTCCAC CCGCCCTCAC
  Y
  CGAAGTCGGA GCCCCTTCAC CCATCCCCCT TCAACCCCCG CAGCAAACTT GCTTTCCCGG
  CACTCTCCTG CCATCGCTCA TCCAGATCCA AACCTCCAAT GCCAGTATCC TGGGTCTGGG
  CCTCTCCCAG GTAGACACTT GGAGAAAGAA GTCTCGGGTC CTGCGGTCAA CTGGATCCTA
  GGCCTGAGGC CTGTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369037706	MGP_WTSI_6_83662221	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246000355					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369037706	MGP_WTSI_6_83662221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83689209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	within coordinates
D6Mit8	DNA segment, Chr 6, Massachusetts Institute of Technology 8	1642 bp proximal
D6Mit8.1	DNA segment, Chr 6, Massachusetts Institute of Technology 8.1	1799 bp proximal
D6Mit8.2	DNA segment, Chr 6, Massachusetts Institute of Technology 8.2	1597 bp proximal
Gm32943	predicted gene, 32943	571 bp downstream
Gm55235	predicted gene, 55235	1295 bp downstream
Rr632917	regulatory region 632917	1306 bp distal
Rr632918	regulatory region 632918	1702 bp distal
Rr632919	regulatory region 632919	953 bp distal
Rr632920	regulatory region 632920	within coordinates
Rr632921	regulatory region 632921	1832 bp proximal
Tssr57361	transcription start site region 57361	939 bp downstream
Tssr61702	transcription start site region 61702	1362 bp upstream
Vax2	ventral anterior homeobox 2	within coordinates
Vax2os	ventral anterior homeobox 2, opposite strand	26 bp upstream