rs246001753 SNP Detail

Summary

• ID
  rs246001753
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149439263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTTCTG GGTTTGCCTA
  TCTAGAAGCC CAGAACATGT GGTCTCTGAG CTGCAGCATC TTTTGCTTCC AAGATGGCAA
  ATTAATTCTA CGACCTACAC CTTAATACCC TCTACCACAC CGCAACCTGA CAGTGCGCAT
  GCGCACAGAA CGAGAGCGAG AGACACGCAC ACACGCGCGC ACCCACACCC ACCCACCCAC
  M
  CACACACACA CACACACATA TGCGCGTGCA CACACACACG CACGCGCGCA TGATAACAGG
  TTTTCCAAAT GCAGCTGGTC CTCAAGGCCC TCAATACGCA TGCGCTATGG TGGACAGGAC
  CATTCTAACC ATCTCATGTC CACATATGTC CCCCGCTCTC AGAGCTACAG AACATCTCGA
  TCCCACCGCC TCCTCCTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss404874778	MGP_WTSI_X_147090810	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs246001753					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404874778	MGP_WTSI_X_147090810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149439263 () rs orientation: forward

Symbol	Name	Function Class
Rr694335	regulatory region 694335	within coordinates
Rr694336	regulatory region 694336	1122 bp proximal
Tro	trophinin	within coordinates
Tssr164370	transcription start site region 164370	1355 bp upstream
Tssr164371	transcription start site region 164371	671 bp upstream
Tssr164372	transcription start site region 164372	855 bp downstream
Tssr164373	transcription start site region 164373	1099 bp downstream
Tssr164374	transcription start site region 164374	1125 bp downstream