rs246008342 SNP Detail

Summary

• ID
  rs246008342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126624808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCCGAAT GCGACAGCTT
  ATGTCGGTTC AGGTGGTAGA CGTCGCGGAA GGCCTTGCCG CACATCTCGC AGGCGTGATT
  CTTCCGGATG CGCTTCCCAG AGGCAGTCGT GGTCACAACG CCACCGGCCG CCACCGCGGC
  TGTGCCGCCG CCAGCCCCGG CTTCTCCCCC ACCCCCGCTG GCCCCGCTCA GCTGGGGGAC
  R
  CTCAAGAGGC TCAGGGGCAC CATGGTGGGC ATCTTCATAG CACCCGAAGG GACCCGGCCA
  GCCTTGGCTC CCGTGTGGAT GGCTTCGTGC CTTCGGAGGT TGTAGCCGTT CTTGAACTCC
  TTGGCGCACA GGGCGCAAAT GTAGGGCCCC TTGCTCTTTG TCTTCTTCTC CAAGACAGAT
  GCAACTGGGG CCACGGCGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079245	MGP_WTSI_7_134169150	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246008342					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079245	MGP_WTSI_7_134169150	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126624808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	within coordinates
Gm31749	predicted gene, 31749	within coordinates
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Rr166710	regulatory region 166710	within coordinates
Rr368440	regulatory region 368440	1087 bp downstream
Rr370584	regulatory region 370584	1583 bp upstream
Tssr74905	transcription start site region 74905	709 bp upstream
Tssr74906	transcription start site region 74906	501 bp upstream
Tssr74907	transcription start site region 74907	479 bp upstream
Tssr74908	transcription start site region 74908	72 bp upstream
Tssr74909	transcription start site region 74909	207 bp downstream
Tssr74910	transcription start site region 74910	241 bp downstream
Tssr74911	transcription start site region 74911	309 bp downstream
Tssr74912	transcription start site region 74912	498 bp downstream
Tssr74913	transcription start site region 74913	591 bp downstream
Tssr74914	transcription start site region 74914	612 bp downstream
Tssr74915	transcription start site region 74915	660 bp downstream
Tssr74916	transcription start site region 74916	697 bp downstream
Tssr74917	transcription start site region 74917	777 bp downstream
Tssr74918	transcription start site region 74918	827 bp downstream
Tssr74919	transcription start site region 74919	849 bp downstream
Tssr74920	transcription start site region 74920	888 bp downstream
Tssr74921	transcription start site region 74921	931 bp downstream
Tssr74922	transcription start site region 74922	991 bp downstream
Tssr74923	transcription start site region 74923	1085 bp downstream
Tssr74924	transcription start site region 74924	1160 bp downstream
Tssr74925	transcription start site region 74925	1346 bp downstream
Tssr74926	transcription start site region 74926	1391 bp downstream
Tssr74927	transcription start site region 74927	1510 bp downstream