rs246017425 SNP Detail

Summary

• ID
  rs246017425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153425106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAAATA TTTCATATTT
  GAATTAAGAG CAAATAATCA CAGTGCTCTC GCACCCATGA CTTAAAGTGA GCTTGGGATG
  TTCTTGTTGA AACGCCGGGG AGAGGGTAGA TCCCTGGAGA CCTCATCCAT GTGAAGGAAT
  GCCAAATTAC AGACAAAAGT TGGCTTAAAT TTAAAACCGC CAAGTTTTAA AAGGGAGGAG
  R
  GGGAAGTGAT GTAGTTCCGA ACAAGGAGAA TGACTTGAGA AATACTTGGC AAACTAGAAA
  TGAGATATTG AAAAAACACA AAACATGAAA TACAAGCAAC CTCTTCTATA AGAGATAGGT
  GTATTAGAGC TAACGGCTAA ATTCCCTTCT GCTCAAAGGC TTAAGAGACC GATTCTGACA
  AGGGTTCCCG GAGGCCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351975338	MGP_WTSI_1_155396490	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246017425					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351975338	MGP_WTSI_1_155396490	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153425106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	125 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	within coordinates
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr420696	regulatory region 420696	1384 bp distal
Rr420697	regulatory region 420697	82 bp proximal
Rr420698	regulatory region 420698	675 bp proximal
Rr420699	regulatory region 420699	1531 bp proximal
Rr420700	regulatory region 420700	1617 bp proximal
Tssr14276	transcription start site region 14276	337 bp downstream
Tssr14277	transcription start site region 14277	374 bp downstream
Tssr14278	transcription start site region 14278	458 bp downstream
Tssr14279	transcription start site region 14279	478 bp downstream
Tssr14280	transcription start site region 14280	685 bp downstream