rs246018546 SNP Detail

Summary

• ID
  rs246018546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6339075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTCAC TTTCAGCGAT
  GGGCTTCTCA GTCCCTGTCT CTAAAGACAC ACGGGTCCGC CATGAAAGAC TCGAAGGTTC
  CAGATGGCCC TGGCCAGTGT TCGGTCACGA ACTGACTAGA CGAGCAGGCT TTGGCCAGGC
  CCAGGCCCAG GCCCTGCCTG CCCTGCCGTG GCCCCGCCCC CGCCATAGTC CCACCCCCAG
  Y
  CGGCCCCGCC CCGGTGGACA GAAGCAGGAA GCGTGCGGGG CTCCACCGAC GCCGCGGTCG
  CAAAGGTGCG GAGGGGACGC AGGGTGCAGG CCGGGCGCAC TGAACTTCCT GCACAGCAGC
  CAGTCGCCGC CCCGGCCCAG CCCCGGCCCA GCCCCGGCTC AACCCGGCCA TGCAGGCCCG
  CACTCGTCCC TGCCCGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss382296041	MGP_WTSI_11_6289078	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246018546					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382296041	MGP_WTSI_11_6289078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6339075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	within coordinates
Rr246943	regulatory region 246943	within coordinates
Tssr100241	transcription start site region 100241	within coordinates
Tssr100242	transcription start site region 100242	10 bp upstream
Tssr100243	transcription start site region 100243	42 bp upstream
Tssr100244	transcription start site region 100244	255 bp upstream
Tssr100245	transcription start site region 100245	353 bp upstream
Tssr100246	transcription start site region 100246	367 bp upstream
Tssr100247	transcription start site region 100247	478 bp upstream
Tssr100248	transcription start site region 100248	501 bp upstream
Zmiz2	zinc finger, MIZ-type containing 2	within coordinates