rs246026959 SNP Detail

Summary

• ID
  rs246026959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84467988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGTCTGG GGTTGATAGA
  GGGCTGTGGC GGCCGGCTGG GCTGGGCTTT TATGCAGCGG GCGTGAGCAG GGCCCTCCCC
  GGAACTGTCC TCCCCGCTGG AAAGTAACAG GAAAGTGCCG GGGAAACAGA CCCAGGGCGC
  GCCGCGCGCC CGCGTCTGGA ACAAACGCAA CATTCCTCCC CCCCCCCCCC CGCGCGCGGC
  Y
  CCGACACCCG CCCCCGCGGG GAGCTGGGTG GTGTGGTTCA GGCGTCCTGG GACGGGGACC
  AGGCACATCG GACAGAGCTG GGTGGAGCTC CCACCCGAAC GATGTCCTGG GCGACCCTCG
  CCTTTCCCAT CAGCAGGACT TGTCGGCTTC TTTTCCAAGA GAGAAACTGA AGTTCAGAGA
  AGCCAGGGGC CAAATAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375384478	MGP_WTSI_8_86265258	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246026959					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384478	MGP_WTSI_8_86265258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84467988 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	176 bp upstream
Cpgi20655	CpG island 20655	within coordinates
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1221 bp downstream
Rr666301	regulatory region 666301	99 bp distal
Rr666302	regulatory region 666302	within coordinates
Rr666303	regulatory region 666303	11 bp proximal
Rr666304	regulatory region 666304	857 bp proximal
Tssr2618	transcription start site region 2618	1246 bp upstream
Tssr2619	transcription start site region 2619	958 bp downstream
Tssr2620	transcription start site region 2620	62 bp downstream
Tssr2621	transcription start site region 2621	1196 bp upstream
Tssr78291	transcription start site region 78291	1003 bp downstream
Tssr78292	transcription start site region 78292	981 bp downstream
Tssr78293	transcription start site region 78293	840 bp downstream
Tssr78294	transcription start site region 78294	785 bp downstream
Tssr78295	transcription start site region 78295	739 bp downstream
Tssr78296	transcription start site region 78296	720 bp downstream
Tssr78297	transcription start site region 78297	29 bp upstream
Tssr82049	transcription start site region 82049	1289 bp upstream
Tssr82050	transcription start site region 82050	1201 bp upstream
Tssr82051	transcription start site region 82051	927 bp upstream
Tssr82052	transcription start site region 82052	169 bp upstream