rs246036169 SNP Detail

Summary

• ID
  rs246036169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAATACT TCCTCTGAGG
  TATTTGCAGC ATTGTGACGA GAAAATAATA GACACATGAT AAGTATTTCA TGGTAAAGAG
  ATGGTAAGTA TTTCATGTGA TACTCTCAGG TAAATTTAAG ATTTCATTGT ATCCTGTTGA
  TTCTTATTTA TGTAAATGAC AACTTTAATA ACCAAATATG TCCTTCTGCA AGCCAGCCTA
  R
  CTACTATAGA ATAGGCATGT CATTTCTAGT AGTCTTTAGT TGGTACTATA GTTCCTAGGC
  AATGAGTGTC AAAAGGCACA CAGTGAATAT TAATAATCCA GGTCAGATTA GGGAGAGCTC
  ATGGCAGTGA ATAAGATTGT GAGCTTCTAA AATAAAGAGA GGTTGAAGAG GTGGTGATGA
  CATTTCAAAT AAGAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777330	MGP_WTSI_5_88125808	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246036169					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777330	MGP_WTSI_5_88125808	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844642 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr46892	transcription start site region 46892	1989 bp downstream
Tssr46893	transcription start site region 46893	1963 bp downstream
Tssr46894	transcription start site region 46894	1918 bp downstream
Tssr46895	transcription start site region 46895	1898 bp downstream
Tssr46896	transcription start site region 46896	1819 bp downstream
Tssr51628	transcription start site region 51628	1953 bp upstream
Tssr51629	transcription start site region 51629	1859 bp upstream
Tssr51630	transcription start site region 51630	1811 bp upstream
Tssr51631	transcription start site region 51631	1772 bp upstream
Tssr51632	transcription start site region 51632	1513 bp upstream
Tssr51633	transcription start site region 51633	709 bp upstream
Tssr51634	transcription start site region 51634	604 bp upstream
Tssr51635	transcription start site region 51635	356 bp downstream
Tssr51636	transcription start site region 51636	382 bp downstream
Tssr51637	transcription start site region 51637	495 bp downstream
Tssr51638	transcription start site region 51638	1271 bp downstream
Tssr51639	transcription start site region 51639	1278 bp downstream