rs246041392 SNP Detail

Summary

• ID
  rs246041392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33035934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCACCTCT GTACAAAACT CAAGTATGCA
  GTAATTCTTA TCTTACTACA AAAACTACCA ACTAAACCAC AGCAGGCAAA GGGCTCTATC
  ACTAGTAGAG TGAGAATTGC TGGTCACAGA CTCAAAAACT CAGTTCAACA GTCTGGGGTT
  Y
  CTAATCAATA AAACTTTAAT AAGTTCTTTT CAAAGTAACA AATTTCAAAG GAAAAAGTTT
  TCAAGCAGTT GAAATGTTTT TAAGTTTTTA TTTCCTTGTA ACTCTTACAT AGTTAATTAA
  GAGTAGTTGT GTAAAAGCAG TAGACAGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321780402	CHEV_6_33008999	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246041392					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33035934 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Cpgi17277	CpG island 17277	755 bp proximal
Rr146107	regulatory region 146107	within coordinates
Rr399607	regulatory region 399607	1235 bp upstream
Tssr60218	transcription start site region 60218	1173 bp downstream
Tssr60219	transcription start site region 60219	1257 bp downstream