rs246045320 SNP Detail

Summary

• ID
  rs246045320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24915643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGAGTT CCGAGATGCT
  TCTCGCATCA CCCCCATCGC TTGGCTCAGA CACCTAAGGG CGGCAAAATT TGGGGTCTTC
  CTGCCTTACG ACGTGCCCAC CTACACGCTT CTCGGTGCCT TAGCAACGCG CGACGGGGCG
  TGGCCTCACA GAGACCAGAC AGTACTTATT GCCAGAGGCT ACCTGTGCCC TAGTAACTGT
  Y
  CCCCACTGCG CAACCTTGAG AGAGGGCGTG TCCTCATCCT CTAGCTTGGA TAAAAGATTA
  TTATGCCTAT TTTAATAGCA GCCTCAGGAA TTTCTTCCTT TTTTTTTTTC TTTTGGAGAC
  AGGGTCTCAT GTAACTTGGA CTAACTTTGA ACTCTGTATG TAGCTGAGTG AAGATGATGT
  TGAATTCTTG AATCTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397861069	MGP_WTSI_17_24833614	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246045320					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861069	MGP_WTSI_17_24833614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24915643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	within coordinates
Gfer	growth factor, augmenter of liver regeneration	578 bp upstream
Noxo1	NADPH oxidase organizer 1	within coordinates
Rr523392	regulatory region 523392	425 bp distal
Rr523393	regulatory region 523393	590 bp distal
Rr523394	regulatory region 523394	within coordinates
Tssr5034	transcription start site region 5034	104 bp upstream
Tssr143060	transcription start site region 143060	349 bp downstream
Tssr143061	transcription start site region 143061	5 bp downstream
Tssr143062	transcription start site region 143062	1551 bp upstream
Tssr143063	transcription start site region 143063	1625 bp upstream
Tssr143064	transcription start site region 143064	1680 bp upstream
Tssr146764	transcription start site region 146764	673 bp upstream
Tssr146765	transcription start site region 146765	561 bp upstream
Tssr146766	transcription start site region 146766	533 bp upstream
Tssr146767	transcription start site region 146767	503 bp upstream
Tssr146768	transcription start site region 146768	463 bp upstream
Tssr146769	transcription start site region 146769	133 bp upstream
Tssr146770	transcription start site region 146770	116 bp upstream
Tssr146771	transcription start site region 146771	84 bp upstream