rs246049713 SNP Detail

Summary

• ID
  rs246049713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101829693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTGGAG GTGGGTACTA
  CCCTTCCTTA GAGTTCATAG AGGAAAGGGG TTCCACGTGA TCTTGTGGGG CTTGCCTGAG
  ATCCAAGTTG TAAGAATAAA TTCCCACCAG CGTGGCTAAA CAGCCTTCCC AAAGTCCGTG
  GGCGTGGCGT CTGAGACAGA AGGGTATGAT GTGGGGCTGC CAGGCATAGC CAGGTGTGAT
  Y
  TGTGCGTGGG ATTGATAGCC AGGATTTTAA TTCTCCCAGG CACCGTGCTT AGAGCTGGAT
  TTCCTGGCCT CTCAGCACCT CACCTCCAAC CCTTCCTGGT TTGCTAATGG CAAATGACAA
  GCAATGGACA TTTATTAATT AAACTGCCCA CAGAGGCCAG TGGTAAAACC GAGGGCCGCA
  TGCAGTGGAG GCTTTCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323834283	CHEV_11_101800181	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246049713					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101829693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3890	CpG island 3890	1206 bp distal
D11Mit332	DNA Segment, Chr 11, Massachusetts Institute of Technology 332	1929 bp proximal
Gm33662	predicted gene, 33662	882 bp upstream
Gm74450	predicted gene, 74450	within coordinates
Rpl27-ps2	ribosomal protein L27, pseudogene 2	634 bp upstream
Rr457131	regulatory region 457131	911 bp distal
Rr457132	regulatory region 457132	792 bp distal