rs246054147 SNP Detail

Summary

• ID
  rs246054147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77873473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGGGAC GGGAGGGTGG
  CGACCCAACA CGCCTGCGCG GGACCAGAGC CCGTGGTCCG CACACAAACA CCAATGGGTG
  ATGCGTCTTC CAGTTCCTGC GGCTGCGCCG TGACCCCTAC GCGCTTTCCC AGGCGCCTAA
  GCGAGGCCTC AGGTTCCGCC CTCCAATCGC AGTACGCCGG CGCACGGCGG AGAGGCGGGG
  Y
  TTCTGGGCTC CGGGCGAATG CCAGCGCGGC TGCGCGCCGG GGGGTACCCC ATCACCGCGG
  CTGCGCGGGA GCCAGGCCGC CGGCTGTCAC TGCGGTTGCG CGCGGCGAGC GGCGATCCCG
  GGGCGCCTGC GCGGGTGGCT TTGCGGGCGC TCGCGGTAAG TTTGCGCCAA GTGCGCGGCA
  GCCGGGACGC AGACGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383949279	MGP_WTSI_11_77796149	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246054147					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383949279	MGP_WTSI_11_77796149	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77873473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3325	CpG island 3325	within coordinates
D11Bhm45	DNA segment, Chr 11, Boehm 45	1337 bp proximal
Gm53689	predicted gene, 53689	within coordinates
Phf12	PHD finger protein 12	107 bp upstream
Rr386326	regulatory region 386326	within coordinates
Rr451838	regulatory region 451838	1384 bp distal
Rr451840	regulatory region 451840	within coordinates
Tssr103207	transcription start site region 103207	485 bp downstream
Tssr103208	transcription start site region 103208	within coordinates
Tssr103209	transcription start site region 103209	63 bp upstream
Tssr103210	transcription start site region 103210	178 bp upstream
Tssr103211	transcription start site region 103211	230 bp upstream