rs246057025 SNP Detail

Summary

• ID
  rs246057025
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49677762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCTAAG CCATATATTA
  TGTTTTTTTT TAAGCCTAAT TCTCAAGTAG ACTAAAAAGC AAAATTATTA GAATTGTAGT
  TTTGGTGATA GGAATTGTGG TAGGCCTTTG TTAGCGATAA TTATGATCAC ATTCATTAAT
  GCTCATTTTG TACAATGTTA GTACATTTGG TTCTATAAGG AGTTGCAAAA TTCAGAACTT
  K
  CACTATTTTT ATTGTGTTTG CTATTGACTA GGAAAGAAAA ACAAACCCAA AATACAGGCA
  TTATGGTTTG GGGTCGTTAG ATGTTTGTAA ATCAGCAATT GATAATGTTT GTCAAAGATA
  AGATGGACTT TTGTTTGTGT ATCATATGTA GGTTCGAAAG AACACACATG AAAGCATGCT
  AACAGTCTCA GAACACAAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396238774	MGP_WTSI_16_49857512	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246057025					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396238774	MGP_WTSI_16_49857512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49677762 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	1177 bp distal
Gm60685	predicted gene, 60685	391 bp downstream
Rr370104	regulatory region 370104	1246 bp downstream
Rr516743	regulatory region 516743	1909 bp distal
Rr516744	regulatory region 516744	1152 bp distal
Rr516745	regulatory region 516745	1217 bp distal
Tssr4902	transcription start site region 4902	1902 bp downstream
Tssr4903	transcription start site region 4903	1593 bp downstream
Tssr138729	transcription start site region 138729	1677 bp downstream
Tssr138730	transcription start site region 138730	1643 bp downstream
Tssr138731	transcription start site region 138731	1287 bp downstream
Tssr138732	transcription start site region 138732	1149 bp downstream
Tssr138733	transcription start site region 138733	1068 bp downstream
Tssr138734	transcription start site region 138734	830 bp downstream
Tssr138735	transcription start site region 138735	780 bp downstream
Tssr138736	transcription start site region 138736	481 bp upstream
Tssr141349	transcription start site region 141349	1827 bp upstream
Tssr141350	transcription start site region 141350	1556 bp upstream
Tssr141351	transcription start site region 141351	1271 bp upstream
Tssr141352	transcription start site region 141352	1019 bp upstream