rs246065863 SNP Detail

Summary

• ID
  rs246065863
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGCACTT GGCCAAAGCG
  GCTCAGCTGA TGGCATACTG ACACAGGCAG CCAGTCCAGA CATCAGCTGA GGACAGAGTA
  GTTCTGCAAA TGATAAGCCT GAGGTCTAGG TCTGAAGCTG GTTTCTGCAT TGATTTGCCG
  CTTCTCTAGA GGTCACAGCA GGCAGGGGGA TTGAAAAAAA AAAATATATA TATATATATA
  W
  AATGAAAATA AATAAATAAA AAGACAATTT AATGAGAAAA TGATGTAGAA CACTAGGCAT
  ATGGCAGTGT GTTCCAGCTT CCCTCCCCGA GGCCTCAGTT TCCCCACCCG AAACCCAACT
  CAGCTGCACA GCCGGGGCCA CCAGGTGGTG TCAAGCCCCA AGTCAGCACT ACAAAGTTCA
  CTCATGCGCA TTCCCGGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356411363	MGP_WTSI_2_163427810	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246065863					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356411363	MGP_WTSI_2_163427810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	within coordinates
Rr397464	regulatory region 397464	465 bp upstream
Rr569433	regulatory region 569433	641 bp distal
Rr569434	regulatory region 569434	within coordinates
Rr569435	regulatory region 569435	41 bp distal
Rr569436	regulatory region 569436	134 bp proximal
Rr569437	regulatory region 569437	259 bp proximal
Tssr21475	transcription start site region 21475	220 bp upstream
Tssr21476	transcription start site region 21476	257 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	240 bp upstream