rs246069191 SNP Detail

Summary

• ID
  rs246069191
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45227948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGAAACT GAAAAATCAT AATGCTTCAA
  TATCTGAAAC TTCTGAGTAC TGACAATGTT ATAATGAAAA ATTCCACACC TGCCATCATG
  TGATAGTTAT AGTCATCAAG AGGAACTGTA TAATCATGGC ATTATCTGAG Ggtgtgtgtg
  W
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgagaga gagagagaga gagagagaga
  gagagagaga gagagagaga CCTACATGAA AAATGAATGA ATTTCCTGTT TAGTCTGGAG
  TCCCACTCCC AAGAGATCTT ATTGTGCATA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325166354	CHEV_16_45407698	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246069191					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45227948 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	959 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	1347 bp downstream
Tssr141235	transcription start site region 141235	1370 bp downstream