rs246088243 SNP Detail

Summary

• ID
  rs246088243
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114959586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGAAGGA CGCCAAAACA
  GGATTCTTCT GCATACATTT ATTGGAAGAG CTTGATAGTG AAAGCGAAAG ACCCCGAGGC
  CAAAAACCAG TGCTGCTTAT ATAGGCCTAG GATAGGCATG TCTACACCCG ATTGGTTATG
  CTTTCAGTAC CTCATTTACA TGCCTCGGGA CAGGCAATGT CAAAAAAAAA AAATACAAAC
  K
  CTACTGCACA TGGGCACTTT GGTTGTTTAC CCATATTCAT AGGCATTGGC TTATTGAAAG
  CAGCGCCATC TTGTAATGGC GTTTATTGGC TTCCCACATC TCCCCCTTTT TTATTCAATA
  GAAAAGGCCT AATCCGACCA TCTACTCTAG CACTTCCTCA GCACAAAAAC GATCAAGAAG
  GATTTAGAAG GGCAAATCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366343606	MGP_WTSI_5_115271534	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246088243					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366343606	MGP_WTSI_5_115271534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114959586 () rs orientation: forward

Symbol	Name	Function Class
2610524H06Rik	RIKEN cDNA 2610524H06 gene	412 bp downstream
Cpgi16338	CpG island 16338	1718 bp proximal
Gm57857	predicted gene, 57857	within coordinates
Gm72099	predicted gene, 72099	within coordinates
Rr124118	regulatory region 124118	1014 bp proximal
Rr378493	regulatory region 378493	46 bp upstream
Tssr52734	transcription start site region 52734	1915 bp downstream
Tssr52735	transcription start site region 52735	1936 bp downstream
Tssr52736	transcription start site region 52736	1953 bp downstream