rs246089421 SNP Detail

Summary

• ID
  rs246089421
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69869412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cgtatgtat acatatgtgt ttgtgtgtat
  aagtacactg tagctatctt cagacacacc agaagagggc atcaggtccc attacagatg
  gttgtgagcc accatgtggg tgctgggaat tgaactcagg acctctggca gagcactctt
  M
  tgatttctgc aaacaccaag acataccccg gcccacaaat ataggcaaaa cactcacaca
  caaaagataa aagcaaaGAA GCAAAACAAA GCTTTTAAAG TAATTTTGTC TTTCTAGCAG
  ATAATTGTGG AAACATCTCA AGGAAACAAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732451	CHEV_11_69792088	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246089421					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69869412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	1493 bp proximal
Elp5	elongator acetyltransferase complex subunit 5	within coordinates
Rr369263	regulatory region 369263	1317 bp upstream
Rr402684	regulatory region 402684	1930 bp upstream
Rr450182	regulatory region 450182	1686 bp proximal
Tssr102586	transcription start site region 102586	1918 bp downstream
Tssr108900	transcription start site region 108900	1632 bp downstream
Tssr108901	transcription start site region 108901	1647 bp downstream
Tssr108902	transcription start site region 108902	1688 bp downstream
Tssr108903	transcription start site region 108903	1882 bp downstream