rs246092827 SNP Detail

Summary

• ID
  rs246092827
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:23475098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTAAAAA TCACTGTCAG
  ATCCTTACAC TGGACATGGA AACATACAGA GGCGGTCATA GCCTCCTTTA AAGTTTTCTG
  GGTGGAACTT CGAGACCCCT AGTCTGCTAT TGTAACAGAT CTCACTATGC TGTTCCTTTG
  CTGAAATTAC ACGAGGTATC CCCTGCGTTC CAGGCGACTC TGACGTGGAC TTGAATATCC
  T
  GTTTTTCCTC AGCCCTCCCC ACTTCTGTTC TCCATCACAC AAAGCTGATG GAGCCTGGGG
  GTTTGCTGCC TGCACTATGA CATATGCAAC TTCAGTGCGC TGGACATGCG CTGTTCTCAG
  CATGGAGACG AAGTTCTCTG TCCCACCCAT CATACCTTAT GTTAACAGGA GACATCTTTT
  TAAAATGGAT AGAATGAAAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324891324	CHEV_15_23404767	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246092827					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23475098 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	mRNA-UTR
Cpgi6966	CpG island 6966	792 bp distal
Gm56739	predicted gene, 56739	277 bp downstream
Tssr130794	transcription start site region 130794	554 bp downstream