rs246100710 SNP Detail

Summary

• ID
  rs246100710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATTCTG TCTCCCAGCC
  AGATGTTGTG GAACGATTGG TTGTTGTAGA CATAAGCCCG GTAGGAACCA CACCTGGATC
  ACACATTGGA GCCTTCATAG CAGCCATGAA GGCTGTTGAG ATCCCAGAGA AGGTGCCGCA
  CTCCCAAGCC CGAAAACTGG CGGATAAGCA GCTTAGTTCG GTTGTCAAGG TGACGCACGC
  Y
  CCCCCCCCCT TTCCCCATGG TGTGTGTCAG AGGAAAAGTG GTGGGTGGGC CTCACAGGGA
  GCCCCTTCAC AGCTGCCAGG TCTCCCCACA GGAAGCGGGC ATTCGGCAGT TCCTGCTCAC
  TAACCTGGTA GAGGTGGGTG GGCGATTCTC CTGGAGACTG AACTTGGATA CGTTAGCTCA
  GCACTTGGAC AAGATAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss366824584	MGP_WTSI_5_135487262	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs246100710					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824584	MGP_WTSI_5_135487262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040246 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	794 bp downstream
Cpgi16736	CpG island 16736	1218 bp distal
Gm43372	predicted gene 43372	1284 bp upstream
Gm73578	predicted gene, 73578	595 bp downstream
Rr110217	regulatory region 110217	1355 bp proximal
Rr110218	regulatory region 110218	1755 bp proximal
Rr124503	regulatory region 124503	245 bp distal
Rr124504	regulatory region 124504	354 bp proximal
Tssr1661	transcription start site region 1661	1360 bp downstream
Tssr1662	transcription start site region 1662	1335 bp downstream
Tssr1663	transcription start site region 1663	1767 bp downstream
Tssr1664	transcription start site region 1664	1785 bp downstream
Tssr49121	transcription start site region 49121	1939 bp downstream
Tssr49122	transcription start site region 49122	1693 bp downstream
Tssr49123	transcription start site region 49123	1666 bp downstream
Tssr49124	transcription start site region 49124	1627 bp downstream
Tssr49125	transcription start site region 49125	1616 bp downstream
Tssr49126	transcription start site region 49126	1547 bp downstream
Tssr49127	transcription start site region 49127	1491 bp downstream
Tssr49128	transcription start site region 49128	1378 bp downstream
Tssr53717	transcription start site region 53717	1354 bp downstream
Tssr53718	transcription start site region 53718	1370 bp downstream
Tssr53719	transcription start site region 53719	1420 bp downstream
Tssr53720	transcription start site region 53720	1465 bp downstream
Tssr53721	transcription start site region 53721	1722 bp downstream
Tssr53722	transcription start site region 53722	1739 bp downstream