rs246115916 SNP Detail

Summary

• ID
  rs246115916
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140540058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAGATCAG ACCACCAGGC
  CTAGGGAACT CAGCACCGGA GTCAGGGCTA CGGAATTGCG TTGACCTGTC CTGGATCCCG
  GTGCCTTGGA GCATCGCCCC CTTCTGCCAG CCTCCCCACC TCTTTCCATA AAACCAAGGG
  AAGAGGAGAG GAAGAGGAAG AGGAAGAGGC AGGTCCCTCC TCGATAGTAT CTCAGGCAGG
  S
  GGGGGGGGGG GGGGCGGCGC GGGGGAGTGG CCATGGATCA AGGATTCTGT CGAATCAGCG
  GCTGTCTGGC ATTCACCTGC CTCAGCCCAG GAAGCTGCTC AGCTGACAAG GGCCGCCTGA
  GGCCCTGCTG GCACCGAGCC TAGGGATCTG TGCTAGGGTG TGGAGATCAG GGAAGCTGGC
  CCCTCATTTT CTTATCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	SM/J	SPRET/EiJ
ss363504334	MGP_WTSI_4_140368662	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	C	C	C	C	C	C	G	G	C	G	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	SM/J	SPRET/EiJ
rs246115916					SNP	G	C	C	C	C	C	C	C	C	G	G	C	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363504334	MGP_WTSI_4_140368662	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140540058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	1853 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	236 bp downstream
Rr603553	regulatory region 603553	1744 bp distal
Rr603554	regulatory region 603554	1622 bp distal
Rr603555	regulatory region 603555	within coordinates
Rr603556	regulatory region 603556	89 bp distal
Tssr44282	transcription start site region 44282	1391 bp downstream