rs246122277 SNP Detail

Summary

• ID
  rs246122277
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATCCTG CTTGTTCCCA
  CATACGCCCA TTTCACTACA GTTCCTACCG TCGTACTTAG ACTCCCTATT ATCCAAGCAT
  CCTGTCCTCA TTTCCAACAC CAAGCTTCTA AAGCTCCCGG TGCTATGGAC ACGTGTGATG
  TGCAGCTCAT CTTCTCCCAC AAATGGACCT CCCCTCCATG CCATTCAAAG TACACTTCCT
  K
  GAACTGTCTG CTGAAACGTC AGTCTTCATT ATCCCATCGA AACGACCAAA CGGTTACCTT
  TTTAAAAAAA ATCTACCATT TACACTATTT CAAATCACCA GTTTAATTTC GGTCTTCAGT
  AGACTGTAGA TCATGGAGTA CATTCCCTTC GCTTGTTATC CCTACCATGC TGAAAATAGT
  TCAACAGGGC ATTAAACAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222358	CHEV_4_98589056	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246122277					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	377 bp proximal
Rr398351	regulatory region 398351	846 bp upstream
Rr595805	regulatory region 595805	46 bp distal
Rr595806	regulatory region 595806	955 bp proximal
Rr595807	regulatory region 595807	1245 bp proximal
Rr595808	regulatory region 595808	1525 bp proximal
Tssr37901	transcription start site region 37901	563 bp upstream
Tssr37902	transcription start site region 37902	1294 bp upstream
Tssr37903	transcription start site region 37903	1359 bp upstream
Tssr37904	transcription start site region 37904	1386 bp upstream
Tssr37905	transcription start site region 37905	1450 bp upstream
Tssr37906	transcription start site region 37906	1480 bp upstream
Tssr37907	transcription start site region 37907	1543 bp upstream
Usp1	ubiquitin specific peptidase 1	1445 bp upstream