rs246125792 SNP Detail

Summary

• ID
  rs246125792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129230673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC ACTTGGGAGG CAGAGGCAGG
  Y
  GGATTTCTAA GTTCGAGGCC AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312053	CHEV_4_129014124	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246125792					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129230673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	876 bp distal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	1510 bp upstream
Rr367701	regulatory region 367701	1213 bp downstream
Rr367702	regulatory region 367702	733 bp downstream
Rr600200	regulatory region 600200	1538 bp distal
Rr600201	regulatory region 600201	858 bp distal
Rr600202	regulatory region 600202	118 bp distal
Tssr39141	transcription start site region 39141	1235 bp downstream
Tssr39142	transcription start site region 39142	893 bp downstream
Tssr39143	transcription start site region 39143	839 bp downstream
Tssr43492	transcription start site region 43492	1616 bp upstream
Tssr43493	transcription start site region 43493	1563 bp upstream
Tssr43494	transcription start site region 43494	1503 bp upstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	within coordinates