rs246126406 SNP Detail

Summary

• ID
  rs246126406
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34542401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGAGCGCT AACTTGGTTC
  CTTTATTAAA TCAACAATAA GACAAAAGGG AGGGCTGACA CGTTTTTTGG CCACTCATGT
  TAATACTGCA GGTGGTGACA ATTTTCTTTT TACATCCAGA AAAATGAGCT ATAAATAAAC
  CTCCAGCTGC GCAACTCTCA GGAGGTGAAG CGCGAGCCTT GGCGGTGCCC TATCTGCGCA
  G
  GCGCACACAG GGCAAGCGCA GTTGCTCCGT TAGCACTCTG AGGCACTACT GCGCAGGCGC
  GGGGCCGGGG CTAGGGCAGA ACGGGCATAG TGGAACGGAC CGTGTGGTAT GCTCCGCGAT
  GTCTGAGGCG ACTTGGTGGT ACCGAGGAGG TGAGGGTGGG TACGCTTAAA GGATAGGTAA
  CCCAGGGCCC ATTGGCAACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss400239140	MGP_WTSI_18_34569002	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs246126406					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400239140	MGP_WTSI_18_34569002	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34542401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	within coordinates
Pkd2l2	polycystic kidney disease 2-like 2	within coordinates
Rr405581	regulatory region 405581	within coordinates
Rr535644	regulatory region 535644	within coordinates
Rr535645	regulatory region 535645	89 bp proximal
Tssr5274	transcription start site region 5274	49 bp upstream
Tssr150459	transcription start site region 150459	854 bp downstream
Tssr150460	transcription start site region 150460	837 bp downstream
Tssr150461	transcription start site region 150461	15 bp upstream
Tssr150462	transcription start site region 150462	67 bp upstream