rs246129395 SNP Detail

Summary

• ID
  rs246129395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59679208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTCATT CAATGACGTT
  AGAAAAAAAG AGAGAAATAA AATAAAATAA AAAGGAGAAA CGGGAAGTAA ACTAGTGTTT
  GTCATGCTCC AAATTCACTT CATGCTAGGT ATACATGTAG CTCAGGCAGA CCGGATCTTT
  CTGCCACAGG AGCGCCACAC CCTTACCCCA GTTTCAAAGG TGCTGATTTT TTTTTTTTTT
  W
  GTAAATTTCT CTTTACATAT TTTTAACATT ATAAACTTGA TTTTAAAAAA AAGTTTGCAA
  AAAAAAAAAA GAAAGAAAAA CACATCAAAA TTAACCAAAC CCCAAAACAA TACAACTCAA
  ATGAATACAT CTATGCAATT AAAGTTGACT TTTGGAAACG AAATTGTGAA GCTTCACATT
  AAATTTAACA CATGTCGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646624	CHEV_14_60060596	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246129395					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59679208 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	428 bp distal
Gm45935	predicted gene, 45935	879 bp upstream
Rr404137	regulatory region 404137	701 bp downstream
Rr493049	regulatory region 493049	895 bp distal
Rr493050	regulatory region 493050	768 bp distal
Rr493051	regulatory region 493051	within coordinates
Setdb2	SET domain, bifurcated 2	879 bp upstream
Tssr125903	transcription start site region 125903	1177 bp downstream
Tssr125904	transcription start site region 125904	763 bp downstream
Tssr129008	transcription start site region 129008	872 bp upstream
Tssr129009	transcription start site region 129009	662 bp upstream
Tssr129010	transcription start site region 129010	651 bp upstream
Tssr129011	transcription start site region 129011	452 bp upstream
Tssr129012	transcription start site region 129012	449 bp upstream
Tssr129013	transcription start site region 129013	442 bp upstream