rs246129677 SNP Detail

Summary

• ID
  rs246129677
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71151420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGTCCA GTTTGAGAAA
  CAGAGAGGCA AGATCTAGAG GGAAGTAAAG AGGGGAGGAA GAGAAAGGGA GGAGAGGCAA
  GAAACAGCAG GGTAGGGACA GAGCCTGCCC GGCAATCCAA GCTGGGCGTG GTGACCCGGC
  CAAACCGCGT TCAGCCCCAC CCCCATGACG TCAACCCACA ATGCAGCGCG TTGTTGTGCC
  W
  TGTAGCGAGC GTCGCTCTTG GCAACAGCGG CCGCCACCAG GCGAGGGCGT CCCGCTCCCG
  CCCCTTTATG CAAATCAACG ACGTCACCTC GCGCCAATGG CGAGCGGGGG CGGTGAGCTC
  ATCGCGGGGG CCGAGGCTAT AAGAGTGCGC GCGGGCGGCG CGGGGCAGAG CGGCCGGCAT
  CGGAGCCGGT CTGTACGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375104831	MGP_WTSI_8_73222669	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246129677					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104831	MGP_WTSI_8_73222669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71151420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20486	CpG island 20486	1759 bp distal
Gm11175	predicted gene 11175	391 bp downstream
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	within coordinates
Jund	jun D proto-oncogene	179 bp upstream
Rr368549	regulatory region 368549	365 bp downstream
Rr368550	regulatory region 368550	within coordinates
Rr400911	regulatory region 400911	1831 bp upstream
Rr664888	regulatory region 664888	1768 bp distal
Rr664889	regulatory region 664889	267 bp distal
Rr664890	regulatory region 664890	113 bp distal
Rr664891	regulatory region 664891	within coordinates
Rr664892	regulatory region 664892	33 bp proximal
Rr664893	regulatory region 664893	908 bp proximal
Tssr77799	transcription start site region 77799	225 bp downstream
Tssr77800	transcription start site region 77800	161 bp upstream
Tssr81647	transcription start site region 81647	443 bp upstream
Tssr81648	transcription start site region 81648	406 bp upstream