rs246133124 SNP Detail

Summary

• ID
  rs246133124
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119573075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA GTGCCCAACG GGCTCCCGCG
  W
  GCTGCCCCTG CCCCGGTGAT CCCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss639728345	FVB_NJ_2_119568330	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	A	A	T	T	T	T	T	T	T	T	T	A	T	A	A	A	A	T	T	A	T	A	A	T	T	A	T	T	A	A	T	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246133124					SNP	A	A	A	A	A	T	A	A	A	A	T	T	T	T	T	T	T	T	T	A	T	A	A	A	A	T	T	A	T	A	A	T	T	A	T	T	A	A	T	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639728345	FVB_NJ_2_119568330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119573075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm25857	predicted gene, 25857	1638 bp upstream
Gm75736	predicted gene, 75736	within coordinates
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Coding-Synonymous
Rr563568	regulatory region 563568	247 bp distal
Rr563569	regulatory region 563569	525 bp distal
Rr563570	regulatory region 563570	483 bp distal
Rr563571	regulatory region 563571	591 bp proximal
Rr563572	regulatory region 563572	623 bp proximal
Rr563573	regulatory region 563573	1924 bp proximal
Tssr19656	transcription start site region 19656	289 bp downstream
Tssr19657	transcription start site region 19657	263 bp downstream
Tssr19658	transcription start site region 19658	239 bp downstream
Tssr25827	transcription start site region 25827	566 bp downstream