rs246141173 SNP Detail

Summary

• ID
  rs246141173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38106260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTCTAC ACCCCAGCAG
  GACCCTTTTT GGAATTTTGA GGCTCAATTG CCCATACATA TGAGTGCAGG TCAATTCAAA
  ATAGGTAGCC CACTTCCCCA CCATGTTTCT GAGTTTCAAG TTAGGATCCG TTAAGGACAA
  TAGATATTAA AGTATCCCAC GATTATCCTG GAGACTTCCC CTAGGAAACT CAAGTGGAGA
  Y
  CCCGTGAGCT AATTAAGTGG TGTTTGGTTT TGTGACGAAT AAAGAACATT TCAAGGCACC
  AGTCTTTAAA GACCTGCTAT ATTGATGCCT TTGTTTATGG TTTTACATAA AATGGCTGCA
  TGCCCCAGCC AGTTCTTTAC TAGGGACACT TCTCCACCAA ACTCTAATTC CTGCAGAATA
  GTTTCTCAGG GTTGTGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402412016	MGP_WTSI_19_38192302	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246141173					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402412016	MGP_WTSI_19_38192302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38106260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	1412 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Tssr156244	transcription start site region 156244	1050 bp downstream
Tssr156245	transcription start site region 156245	503 bp upstream
Tssr159111	transcription start site region 159111	1011 bp upstream
Tssr159112	transcription start site region 159112	961 bp upstream
Tssr159113	transcription start site region 159113	896 bp upstream
Tssr159114	transcription start site region 159114	495 bp downstream
Tssr159115	transcription start site region 159115	534 bp downstream
Tssr159116	transcription start site region 159116	570 bp downstream
Tssr159117	transcription start site region 159117	668 bp downstream