rs246143081 SNP Detail

Summary

• ID
  rs246143081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100310271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTTT
  TTTTTTTTTT TTTTTTGGTT TTCCGAGATA GGGTTTCTCT GTGTAGCCCT GGCTGTCCTG
  GAACTCACTT TGTAGACCAG GCTGGCCTCA AACTCAGAAA TCCGCCTGCC TCTGCCTCCC
  AAGTGCTGGG ATTAAAGGCG TGCGCCACCA ACACCCGGCT CTTCTAATTT CTTGTTCTTT
  Y
  CAGTTCTGGT CCCTCCTAGT TGTACTTTGC TCCTCTCCCG ACTAATCAGA ACATACTGCT
  CCCCTTCTCT AACTTGACTC CCCTCCAGAC CCACTCACTG GCTTCCTTTT TGTCTAACAT
  CAGGAAGAGG ATGGTGGGAG AGGCAAAGTG AAAGCTCACT GGTGAGATCA GAAAAAAAAA
  GTGAAAGTGA AGACAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404177279	MGP_WTSI_X_98462004	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246143081					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404177279	MGP_WTSI_X_98462004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100310271 () rs orientation: forward

Symbol	Name	Function Class
Il2rg	interleukin 2 receptor, gamma chain	within coordinates
Rr692812	regulatory region 692812	1580 bp proximal
Tssr161640	transcription start site region 161640	221 bp upstream
Tssr163865	transcription start site region 163865	1991 bp upstream
Tssr163866	transcription start site region 163866	1916 bp upstream
Tssr163867	transcription start site region 163867	1893 bp upstream
Tssr163868	transcription start site region 163868	1850 bp upstream
Tssr163869	transcription start site region 163869	1758 bp upstream
Tssr163870	transcription start site region 163870	1733 bp upstream
Tssr163871	transcription start site region 163871	1721 bp upstream
Tssr163872	transcription start site region 163872	1700 bp upstream
Tssr163873	transcription start site region 163873	1682 bp upstream
Tssr163874	transcription start site region 163874	1219 bp upstream
Tssr163875	transcription start site region 163875	989 bp upstream
Tssr163876	transcription start site region 163876	934 bp upstream
Tssr163877	transcription start site region 163877	390 bp upstream
Tssr163878	transcription start site region 163878	126 bp downstream
Tssr163879	transcription start site region 163879	688 bp downstream
Tssr163880	transcription start site region 163880	1517 bp downstream
Tssr163881	transcription start site region 163881	1553 bp downstream