rs246148776 SNP Detail

Summary

• ID
  rs246148776
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116424836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTCGTG GGGTGGGAAG
  CTCATTCTGG AAAGCTAGAT CCCCCACCCA CGGGGCTCTG GTGATTCAGT CGCGAGCCAG
  GGGCTCTGGT TGGGCACTTT GTCCCACGTG CATGGAAGCC CAGGCAGAGA ACCCCACCAC
  TCTTTCCTCC TGTCCCTCAG ATCTGGCCGC CCCGGGGAAT GACGAGGGCG CTCACACAGC
  M
  CAGGGAGGTG GAGAGGGCGA GCCCCACGGC CAGTCGCCAG ACACCCTCCT GGGCAACACC
  GATAAGAAGC TGAACGCAGG AGCCGCCGTT ACCTCTAGCA GCGCCGGGGC AGCACCGGTG
  GCCCCTTGTC AGCGGGAGCC CCGGGACCTG GCTATGGAAC CAGGTTTGTG GGGTACCTGT
  CTGGGAAAGG CTAATGAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384854432	MGP_WTSI_11_116395324	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246148776					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384854432	MGP_WTSI_11_116395324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116424836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	within coordinates
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	933 bp upstream
Tssr3738	transcription start site region 3738	1509 bp downstream
Tssr3739	transcription start site region 3739	6 bp upstream
Tssr105964	transcription start site region 105964	1996 bp downstream
Tssr105965	transcription start site region 105965	1585 bp downstream
Tssr105966	transcription start site region 105966	1532 bp downstream
Tssr105967	transcription start site region 105967	1449 bp downstream
Tssr105968	transcription start site region 105968	735 bp downstream
Tssr105969	transcription start site region 105969	707 bp downstream
Tssr105970	transcription start site region 105970	38 bp downstream
Tssr105971	transcription start site region 105971	27 bp upstream
Tssr105972	transcription start site region 105972	48 bp upstream
Tssr111937	transcription start site region 111937	887 bp upstream
Tssr111938	transcription start site region 111938	301 bp upstream