rs246157387 SNP Detail

Summary

• ID
  rs246157387
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:3620584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGCTGC TTCTATGTGG
  TTAAAGGGTT AGAGTATGTA GAGCAGCTAG AAAAGGCACT GAAACAAAGC AACAAAGCAA
  TTCACCCCAG AATATCCAAA CAGAAGCTGG GGAGGCTCCT CATACCTCTG TCCAGTAAAA
  CAGTGTTGGA GGTTGGTGGT GGGGGTGGGG AGAGTAGAGG GGGTGGGGAG GGTGATAGGT
  G
  GGGGTGGGGA GGTGGGAGGT GTTGTTTGCC TAGAACCACA GTTGCAAATG AACTTGGGGG
  ATCCTGGGAC CGTGGTGTCA GCAAAGCTGC ACCACTTCTA CTATATTGTT TGAATCCGGC
  TTGTTTAGGA ACTCAGAATC ACTTAGCGCG ATGAAGGCAC TTCAGTATTA TTGATCTTGC
  TTTTTTCTTG AGATGGCTTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss397489411	MGP_WTSI_17_3570309	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs246157387					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397489411	MGP_WTSI_17_3570309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:3620584 () rs orientation: forward

Symbol	Name	Function Class
Gm34155	predicted gene, 34155	within coordinates
Rr331141	regulatory region 331141	617 bp proximal