rs246159972 SNP Detail

Summary

• ID
  rs246159972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:48608438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTCAAG CACGTAGCTT
  TGGTCTTGGT CTTATTCCCT GGAAGTAAAT TTTCCGAGTG CCATTAAGAG CATCAAGTCT
  ATATTATGGC CTAACAGAGG GAGAAATTAT AGATAACACA TATCTCATTG ATTTGATCAG
  TGAGCATCAC ACATTCATTT AATGTGCCAC AGAAATGATA ATATTCAACA CTTATGAAAT
  W
  CTGAACTGGC AACAGATGCC ACTGATTTCT GCCTGAATAG TTACATCTGA CCCTCCTAAG
  CATGGATGGG TCATATTTTT CTTGGTTCAT TAAATATAAA GCCATTTTAC TTATCCATTT
  CAGAATCATT TATACATTTA CTAATAATCC ATTCAAAATA TGCCAGTTCT ACTAATTGCT
  GGGATGACCA TGGAAATAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324029943	CHEV_12_49662642	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246159972					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:48608438 () rs orientation: forward

Symbol	Name	Function Class
Gm1818	predicted gene 1818	1770 bp upstream
Gm59684	predicted gene, 59684	1675 bp downstream
Rr465734	regulatory region 465734	1662 bp distal