rs246161964 SNP Detail

Summary

• ID
  rs246161964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26750290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTTTAA GCAGCTTATT
  TACTCTCTCT GGTTCCCATT TGTAAATGAA GAGCACAATT GTTGATTACG ATATCATTTT
  GATTTTAGAC AAAGTCTCCC CCATGTAGCC TAAGTAGGCT TCCAACACTC TCTGTGTGTA
  TGGTGTATGT CTATGTACAG GGATATGGGA AAGGGGCGTG TACAAGGAGC ACATGTGGAG
  R
  CCAGAGGAAG ACAGCTAATG TCTCTAATGC TCTCTGACTT AGCCCCTTGA GACACTCTCT
  GTCCCAACAC TGTCACCATC CTTTGACTAG GTTAATTGAC TTATCAACAA GCACCATCAA
  TCCTCTGTCA CTATGAGTCC CCTCCCACCA ACACTAGGGT TATATATGCA TTGTACAAAT
  GCCTACAAAA GCCCACCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901744	MGP_WTSI_17_26668261	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246161964					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901744	MGP_WTSI_17_26668261	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26750290 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Rr329984	regulatory region 329984	1890 bp distal
Tssr143239	transcription start site region 143239	492 bp upstream
Tssr143240	transcription start site region 143240	1563 bp upstream
Tssr143241	transcription start site region 143241	1579 bp upstream
Tssr143242	transcription start site region 143242	1593 bp upstream
Tssr143243	transcription start site region 143243	1618 bp upstream
Tssr143244	transcription start site region 143244	1649 bp upstream
Tssr146959	transcription start site region 146959	366 bp downstream
Tssr146960	transcription start site region 146960	1298 bp downstream
Tssr146961	transcription start site region 146961	1321 bp downstream
Tssr146962	transcription start site region 146962	1349 bp downstream
Tssr146963	transcription start site region 146963	1394 bp downstream