rs246164597 SNP Detail

Summary

• ID
  rs246164597
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24927529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCTTT TCATTAAAAA
  TTAATTTGTA GCCGGGCGTG GTGGCACACG CCTTTAATCC CAGCACTCGG GAGGCAGAGG
  GAGGCGGATT TCTGAATTCG AGGCCAGCCT GGTCTACAAA GTGAGTTCCA GGACAGCCAG
  GGCTATACAG AGAAACCCTG TCTCGAAAAA CCAAAAAAAT AAAAATAATA AATAATAAAT
  W
  AAAAATAATA ATAATTTGCA GGGCTGGAGA GATAGCTCAG TGGTTAAGAG CATTGGCTGC
  TCTTCCCGAG GTCCTGAGTT CAATTCCCAG CAACCACATG GTGACTGACA GCTGTTTATA
  ATGTGATCTA ATGTCCCTTT CTGGCATGCA GATGTATATG TAGATAGAGC ACTTTATAAA
  TAAATTTTAA AATTAACTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	SJL/J	SPRET/EiJ
ss397861338	MGP_WTSI_17_24845500	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	SJL/J	SPRET/EiJ
rs246164597					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861338	MGP_WTSI_17_24845500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24927529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	649 bp distal
Rr392440	regulatory region 392440	1686 bp upstream
Rr405091	regulatory region 405091	703 bp downstream
Rr523395	regulatory region 523395	906 bp distal
Rr523396	regulatory region 523396	405 bp distal
Rr523397	regulatory region 523397	105 bp proximal
Rr523398	regulatory region 523398	307 bp proximal
Tbl3	transducin (beta)-like 3	902 bp upstream
Tssr146772	transcription start site region 146772	945 bp upstream
Tssr146773	transcription start site region 146773	894 bp upstream