rs246170815 SNP Detail

Summary

• ID
  rs246170815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65199819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCTTGG ACACTCTATG
  CACATGGTGC ACATACAATG TAGGCAAAAC ACCCATATAC ATGATTTTTT TTTTTTTTTG
  AGGCAGGGTT TCTCCATGCA GCCTTGGCTG TCCTGAAGCT TGAGCTGTAG ATCAGGCTGA
  GCTTGAACTC AGAAATCCAC CTGACTCTTT AATCCCAAGT GCTGGGATTA AAGGCATGTA
  Y
  CACCATCACC TGGCTTTGCT GCTTGTCTTT TTAAAAAATA TTTTTAGAAC TGGAGATATG
  ACTCAGCATT TAAGAGCACG TTGCTCTTGC AGAGGTACCA GGTTCCCATC ACCCACATGG
  TGATTCACAG CCATGATTAA CCCTAGGTCC AGGGGATTCA ACAGGCACAC TTGTGATGCA
  CTCACATTCA TGCAGGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377861899	MGP_WTSI_9_65140344	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246170815					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377861899	MGP_WTSI_9_65140344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65199819 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	1723 bp upstream
Cpgi21943	CpG island 21943	1458 bp proximal
Rr201316	regulatory region 201316	1619 bp distal
Rr206623	regulatory region 206623	381 bp proximal
Rr368805	regulatory region 368805	1442 bp upstream
Tssr85679	transcription start site region 85679	1620 bp upstream
Tssr85680	transcription start site region 85680	1642 bp upstream
Tssr85681	transcription start site region 85681	1738 bp upstream
Tssr85682	transcription start site region 85682	1833 bp upstream
Tssr85683	transcription start site region 85683	1858 bp upstream
Tssr85684	transcription start site region 85684	1890 bp upstream
Tssr85685	transcription start site region 85685	1903 bp upstream