rs246172563 SNP Detail

Summary

• ID
  rs246172563
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56325525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTACTC GCGGCCGCGG
  AGTCCACAGC GCGCTCCCGG CCGCTCTCCG TCCGCCCAGC CCACCAGTCC GCTCGCTCCT
  CCCAACCCTG CACGCCGCCC CGCCGCGCGC ACCCTTGCCG CTTCACTTCT TCAGACCGCG
  CGCGCTCGCC CGCGCGTGCC CGCACCAAAC CTCGGCGGTC TCCGAGCTCT ACTCTCAGCC
  M
  CATGGGAGGA GTTGACAAGA GGCCACGCCT CCCTGAGTGC CAATATCCGG AGAACACGAG
  CTAGAGAAAG TCTGATTGGC TGAGGGGTGG AGCCAAAGCC AGGGGGCGGG GCGGCAGGGA
  CCTTGAGTCC ATGTGACGGG GAATTTGGGT TCAATTAAAC GCCAGTGGAA AGAAACAGCG
  CAGATTTGGA TTTTTTTCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377668715	MGP_WTSI_9_56266048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246172563					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377668715	MGP_WTSI_9_56266048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56325525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21795	CpG island 21795	within coordinates
Hmg20a	high mobility group 20A	368 bp upstream
Peak1	pseudopodium-enriched atypical kinase 1	174 bp upstream
Rr206471	regulatory region 206471	within coordinates
Rr368756	regulatory region 368756	289 bp upstream
Rr368757	regulatory region 368757	595 bp upstream
Rr401386	regulatory region 401386	within coordinates
Tssr85252	transcription start site region 85252	146 bp upstream
Tssr85253	transcription start site region 85253	174 bp upstream
Tssr85254	transcription start site region 85254	383 bp upstream
Tssr85255	transcription start site region 85255	456 bp upstream
Tssr85256	transcription start site region 85256	564 bp upstream
Tssr85257	transcription start site region 85257	626 bp upstream
Tssr85258	transcription start site region 85258	1244 bp upstream
Tssr89707	transcription start site region 89707	189 bp upstream
Tssr89708	transcription start site region 89708	160 bp upstream
Tssr89709	transcription start site region 89709	131 bp upstream
Tssr89710	transcription start site region 89710	594 bp downstream
Tssr89711	transcription start site region 89711	687 bp downstream